Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSITIPIVIAFDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLVDNLSLENQQKLKETLVPFSAFASVDFLDISTPNLYTTSVEPSVIDKIHEAFLQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFGAAKDFSSPKSLKHFQTEREREPRQKFSLYEHYLKEKDMQ-IICENHYNVGFLIVNLKLWRADKLEEHLLNLTHQKGQCVFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKR----------FIPNQQEIIMLHFYFVGKPWILPTA-LYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTFEFLAPLLNPKTLLEYVFFRLSKIFKRLKERFLNS |
| 1G9R Chain:A ((1-277)) | ----MDIVFAADDNYAAYLCVAAKSVEAAHPD----------------TEIRFHVLDAGISEANRAAVAANLRGGG-G-NIRFIDVNPEDF-------------AGFP-----LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQ-EG------------------Y--KQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTVPEEWRGKL-------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1G9R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -235720 for 2202 contacts (-107.0/contact) +
2D Compatibility (PS) -27119 + (NN) -8247 + (LL) 9044
1D Compatibility (HY) -7200 + (ID) 2600
Total energy: -271842.0 ( -123.45 by residue)
QMean score : 0.400
|
|
|