Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDYRAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIWYAEVFKFSDMVFILLKKDEHFVLYKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKRFAQGDKSVSCKSKQKDEIGDLANEFDNCIQKINAMNESRVLFLRSIMHELRTPITKGKILSSMLKE------ELSCKRFSSIFDHLNMLIEQFARIEQLASKNYGSNKEKFLMSDL-------IDKIEKMLLIDEDKKSPIHV-----SSSNYIIEADFELFAIALKNMIDNAIKYSDDKQVF---LDFIGNNLVVSNKSKPL---KEDFEKYLQPYFKSSNPSQAHGFGLGMYIIKNALEAMGLNLSYHYSNGRICFTIHDCVFNSFYDLEADNEELPPPRKFERGEGNEGNRKSQLWG |
| 4U7N Chain:A ((39-257)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSNVSHELRTPLTSLRSYIEALSDGAWKDPEVAPGFLKVTQEETDRMIRMINELLSLSRMDSGTTRVDMELVNINEMFNYVLDRFD-MILKKDDN---YYTIKREFTKRDLWVEIDTDKFTQVLDNIMNNAIKYSPDGGVVTCRLLETHNQVIISISDQGLGIPRADLGHVFDRFFR---------TGLGLAISKEVVQMLG---------GRIWVDSVEGKGSTFYISLPYE------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U7N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -78289 for 1156 contacts (-67.7/contact) +
2D Compatibility (PS) -19952 + (NN) -10673 + (LL) 19300
1D Compatibility (HY) -11600 + (ID) 2300
Total energy: -103514.0 ( -89.54 by residue)
QMean score : 0.387
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