Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAIYTPEGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASA----YDPISGSQKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAFSVISKIF |
3VMK Chain:A ((253-323)) | ---------------------------------------------------------------------------------LCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAGGSAPDIAGQGIANPVAQIL-------SAALLLRHSLKLEDAALAIEAAVSKALSDGYLTCELLPASERSQAKSTSQMGDYIAQAIAEG------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VMK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45540 for 352 contacts (-129.4/contact) +
2D Compatibility (PS) -6918 + (NN) -3340 + (LL) 11840
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -48258.0 ( -137.10 by residue)
QMean score : -0.025
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