Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKTFHAGDKCEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEASKWMLDGMQVQVLLHNDKAISVDVPQVVALKIVETAPNFKGDTSSASKKPATLETGAVVQVPFHVLEGETIKVNTETEEYLEKVK
3A5Z Chain:D ((10-190))
-----NDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDP----------GKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRV-
General information:
TITO was launched using:
RESULT:
Template:
3A5Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85017 for 1175 contacts (-72.4/contact) +
2D Compatibility (PS) -18215 + (NN) 2885 + (LL) 636
1D Compatibility (HY) -14800 + (ID) 3850
Total energy: -118361.0 ( -100.73 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_3A5Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A5Z-query.scw
PDB file :
Tito_Scwrl_3A5Z.pdb
: