Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKAIDISHAFE-KPLYNGVNLRIKPKESLAILGVSGSGKSTLLSHLATMLKPDSGTVSLLEHQDIYALNSKKLLELRRLKVGIVFQSHYLFKGFSALENLQVASILA-K-----QEINHSLLEQLGIAHTLKQGVGELSGGQQQRLSIARVLSKKPQIIIADEPTGNLDTTSANQVISMLQNYITENEGALVLATHDEHLAFTCSQVYRLEKESLIKEK
2PCJ Chain:A ((4-220))
ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG-KEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN-EGGTSIVMVTHERELAELTHRTLEMKDGKVVGEI
General information:
TITO was launched using:
RESULT:
Template:
2PCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115871 for 1698 contacts (-68.2/contact) +
2D Compatibility (PS) -22854 + (NN) -8205 + (LL) 96
1D Compatibility (HY) -17200 + (ID) 3850
Total energy: -167884.0 ( -98.87 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_2PCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PCJ-query.scw
PDB file :
Tito_Scwrl_2PCJ.pdb
: