Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRLILFNRNAFLLACMFVSSVYANAVLDAYAVENPYITITLTSLLAPLSMLAFLKTPRNSAFALGFFVGALLFYWCALSFRYSDFTYLLPLIIVLVALVYGVLFYLLLYFENPYFRLLSFLGSSFIHPFGFDWLVPDSFFSYSVFRVDKLSLGLIFLACIFLSAQNLKKYRMIGVLLLLGALDFHFFKISDLKEVGNIELVSTRTPQDLKFDSNYLNNIENNILKEIKLAQSKQKTLIVFPETAYPIALENS---------PFKTQLEDLSD--------KIAILIGTLRAQ----------GYSLYNSSFLFSKKS-VQIADKVILAPFGEIMPLPEFLQKPLEKLFFGESAYLYRNAPHFSDFTLDDFTFRPLICYEGTSKPAYS----SSPSKVFILMSNNAWFSPSIEPTLQRTLLKYYARRYDKIILHSAN---------FSTSYILSPSLLGDILFRKRS |
| 3N05 Chain:A ((3-246)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQLRLALNQIDSTV-GDI-----AGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDE----------FR-------YFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASP--YERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRD--GEVVARAPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N05.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116504 for 1629 contacts (-71.5/contact) +
2D Compatibility (PS) -21782 + (NN) -7684 + (LL) 19284
1D Compatibility (HY) -2800 + (ID) 1400
Total energy: -130886.0 ( -80.35 by residue)
QMean score : 0.492
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