Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDNERTIVVRVLKFDPQSAVNKPHFKEYQLKETPSMTLFIALNLIREHQDPDLSFDFVCRAGICGSCAMMVNGRPRLACKTLTSSFENGVITLMPMPSFTLIKDLSVNTGDWFSDMTKRVESWAHSKEEVDITKPEKRVEPDEAQEVFELDRCIECGCCIASCGTKLMRPNFIGAAGMNRAMRFMIDSHDERSDDDFYELVGDDDGVFGCMSLIACHDTCPKELPLQSSIATLRNRMLKVGKSR
1QLB Chain:E ((3-238))
-----RMLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSVN---
General information:
TITO was launched using:
RESULT:
Template:
1QLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140198 for 1798 contacts (-78.0/contact) +
2D Compatibility (PS) -25151 + (NN) -7962 + (LL) -8
1D Compatibility (HY) -33600 + (ID) 8350
Total energy: -215269.0 ( -119.73 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_1QLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QLB-query.scw
PDB file :
Tito_Scwrl_1QLB.pdb
: