Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFEMRKIAFNAPKAFSLEHEGVVLEGEIVRVGAKLFRLKAR-------------LKGELMLICD---TSGKEFKKSLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD
4OGZ Chain:A ((45-141))
--------AENLPKGLKLDKETGIIKGKVVEKGTYKVMLKAENALGTDTQELLINIGDELLLTPPMGWNSWNTFGRHLTEELLLQTADAMVENGMRDLGYAYINIDDFWQLPERGADGHIQIDKTKFPRGIKYV
General information:
TITO was launched using:
RESULT:
Template:
4OGZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12446 for 374 contacts (-33.3/contact) +
2D Compatibility (PS) -8103 + (NN) 1295 + (LL) 1140
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -25664.0 ( -68.62 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_4OGZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OGZ-query.scw
PDB file :
Tito_Scwrl_4OGZ.pdb
: