Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGKFMGKMTDSSLLSITSMNDEPVVIKNLIVNRGNSCEATKKVEPKFGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGEYYHKFSK |
3NYK Chain:A ((36-81)) | -------------------------------------------------------------VDKGHNVESIKDMIPEGAEKFKSKINENYVLTVTQPGAYLVKCTPHYAMGMIALIAVGDSPANLDQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NYK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 7903 for 230 contacts (34.4/contact) +
2D Compatibility (PS) -4578 + (NN) 1684 + (LL) 4228
1D Compatibility (HY) -1600 + (ID) 650
Total energy: 6987.0 ( 30.38 by residue)
QMean score : 0.228
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