Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEELFKEKSRYITGVVLIVVAGLILYADNLLLFWAVLGGIYAVGFFEALRL-FQVKASFSLYLILVLSWVAAY-----FNGHPVECALISAMVMASVIAY--QKAHHSEAILPFLYPGVGFFA--LFGVYKDFGAVAIIWLLVVVVASDVGAFFGGKLLGKTPFTAT-SPNKTLEG---ALIGVVLASVLGSFVGMGKLSGG---FLMALLFSFLIALMAVFGDLYESYLKRKVGVKDSGKILPGHGGVLDRLDSMLFGALSLHVLLYFLEIWKETAVFLGD
4Q2E Chain:A ((29-290))
------ITASVVAPFVVLCFV--------SYESLIGLVSAILILAGYELITLEMKERDARFFYVILLALYPVLYGLVFEEPTQPLSILFITGVVFSLITDKDPSQVFKTVAAFSIALIYVTFFLSFFLPIYRDFGAANALLVLTSTWVFDSFAYFTGLKFGRTRISPRYSPRKSLEGVIGGFLGVVIYTFLYRLVVNDLLSVNVICFRTFLPFAATVAIMDTFGDIFECALKRHYGVKDSGKTLPGHGGMLDRIDGLLFVAPVSYIVFKILEGVVR-------
General information:
TITO was launched using:
RESULT:
Template:
4Q2E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -234778 for 1873 contacts (-125.3/contact) +
2D Compatibility (PS) -25722 + (NN) -16017 + (LL) 1924
1D Compatibility (HY) -23200 + (ID) 3900
Total energy: -301693.0 ( -161.07 by residue)
QMean score : 0.294
(partial model without unconserved sides chains):
PDB file :
Tito_4Q2E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q2E-query.scw
PDB file :
Tito_Scwrl_4Q2E.pdb
: