Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILRASVLSALLLVGLGAAPKHSVSASDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQDLKMVVIEDPDTKYNIPLVVSKDGNLVIGLSNIFFSNKSDDVKLVAETNQKIQALNATQQNSAKLNAIFNEIPADYAIELPSTNAENKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRMVVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTKVENTTKKIFESGVIKGVPFLYHYKA
3TDG Chain:A ((32-263))
-------------------------------QDNLVSVIEKQTNKKVRILEIKPLKSSQDLKMVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQNSAKLNAIFNEIPADYAIELPSTNAANKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRMVVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTKVENTTKKIFESGVIKGVPFLYHY--
General information:
TITO was launched using:
RESULT:
Template:
3TDG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109110 for 1680 contacts (-64.9/contact) +
2D Compatibility (PS) -25621 + (NN) -14750 + (LL) 2852
1D Compatibility (HY) -31600 + (ID) 11400
Total energy: -189629.0 ( -112.87 by residue)
QMean score : 0.689
(partial model without unconserved sides chains):
PDB file :
Tito_3TDG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDG-query.scw
PDB file :
Tito_Scwrl_3TDG.pdb
: