Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEITFYYEKGEKKILYAPKIN--HLDFKTFKDALSLGKGMMPKY---NLNLEEIQAIYLYITSLGHKDERKDPSKP
1WVE Chain:C ((2-76))
------------------------SQWGSGKNLYDK----VCGHCHKPEVGVG----------------PVLEGRGLPEAYIKDIVRNGFRAMPAFPASYVDDESLTQVAEYLSSLPAP---------
General information:
TITO was launched using:
RESULT:
Template:
1WVE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34046 for 474 contacts (-71.8/contact) +
2D Compatibility (PS) -7554 + (NN) -3498 + (LL) 4360
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -44888.0 ( -94.70 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_1WVE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WVE-query.scw
PDB file :
Tito_Scwrl_1WVE.pdb
: