Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNYSYKNIQAIDFTQLNDEEKLLVLEFRNHPNTALWMYSANISLKTHLQFIEDLKNSPSHRYFLFKEESVYLGVGSITKINFFHKHGYLGIYKNPFLKNKGGTILKALERIAFEEFQLNSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKGYNDQSPLKL
4RI1 Chain:C ((8-182))
-KKNYSYKNIQAIDFTNLNDGEKLLVLEFRNHPNTALWMYSTFISLKTHLQFIEDLKNSPNHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNGGETILKALEFIAFEEFQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKGYNDQS----
General information:
TITO was launched using:
RESULT:
Template:
4RI1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67490 for 1279 contacts (-52.8/contact) +
2D Compatibility (PS) -18717 + (NN) -3293 + (LL) 484
1D Compatibility (HY) -26800 + (ID) 8250
Total energy: -124066.0 ( -97.00 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_4RI1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RI1-query.scw
PDB file :
Tito_Scwrl_4RI1.pdb
: