Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDIKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSGSMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHLVVLA
4LJL Chain:B ((1-219))
MKSHFQYSTLENIPKAFDILKDPPKKLYCVGDTKLLDTPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDVVIIPQADLKSGSMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEM-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LJL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123968 for 1951 contacts (-63.5/contact) +
2D Compatibility (PS) -23764 + (NN) -11193 + (LL) 3820
1D Compatibility (HY) -30800 + (ID) 10700
Total energy: -196605.0 ( -100.77 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_4LJL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LJL-query.scw
PDB file :
Tito_Scwrl_4LJL.pdb
: