Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILMMENRMPKEIQKTEASEKSIEKVLNAYDKQQHHHQDALAIQYLPAVRAMAFRLKERLPSSIDFNDLVSIGTEELIKLARRYESALNDSFWGYAKTRVNGAMLDYLRSLDVISRSSRKLIKSIDIEITKYLNEHGKEPSDEHLAEALGENIEKIREAKTASDIYALVPIDEQFNAIEQD---------EITQKIEAEELLEHIQKVLNQMSEREQILIQLYYFEELNLSEIKEILGITESRISQIIKEVIKKVRQSLGVNHG
1RP3 Chain:A ((3-233))
---------------------------NPYSNQIEREE--LILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLDFGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDYSELIPSSTNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREMLSN---
General information:
TITO was launched using:
RESULT:
Template:
1RP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65129 for 1592 contacts (-40.9/contact) +
2D Compatibility (PS) -24566 + (NN) -11947 + (LL) 3128
1D Compatibility (HY) -16400 + (ID) 3550
Total energy: -118464.0 ( -74.41 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1RP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RP3-query.scw
PDB file :
Tito_Scwrl_1RP3.pdb
: