Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAFKAFALLIVFFSNALLAQDLKIAAAANLTRALKALVKEFQKEHPKDAINISFNSSGKLYAQIAQNAPFDLFISADIARPKKLYDEKIT-PFKEEVYAKGVLVLWS--ENLKMDSLEILKDPKIKRIAMANPKLAPYGKASMEVLDRLKLTPSL--KSKIIYGASISQAHQFIATKNAQIGFGALSLIDKKDKNL--SYFIIDKTLYNPIEQALIITKNGANNPLAKVFKDFLFSPKARAIFKEYGYIVD
1ATG Chain:A ((1-229))
----------------------ELKVVTATNFLGTLEQLAGQFAKQT-GHAVVISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSAKPGLVDNQGKVLAGNGWRHIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYVLP
General information:
TITO was launched using:
RESULT:
Template:
1ATG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158045 for 1938 contacts (-81.6/contact) +
2D Compatibility (PS) -23254 + (NN) -6771 + (LL) 2476
1D Compatibility (HY) -14800 + (ID) 4150
Total energy: -204544.0 ( -105.54 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_1ATG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ATG-query.scw
PDB file :
Tito_Scwrl_1ATG.pdb
: