Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLIK-----VSGDKKVIEVSIPLTSISGKARVKIRHAFSDYGISTATRKIPFS-----LKHYVEWQIGYDVPIKDKEKFELTTLKDEKYHFLGANNKVKTLYELSEMIYYAKRLGLISLENLENTLKFLEKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPLLIHSFDDNELSEIVIKEQQYGSKTQAMLYFCFSILELKTATPLLNRTAMPKEHALLIIHETNALVFLEMLKIFGLLSQVHHNDVLKILEKILQN
2DVY Chain:A ((1-223))
MIHLTSVEASVSFENGKIVVRLPITRPTSKIRVKKI--ENGVGIPVSTRKKSFPSDENLRDYYIEWQISYA--------------RDGKYD-----------YELSRMVRLAHEHGILTYNDIYELLKFADDVKSYLEDK-GIRRESTNEELYG---FNIYEDVYPVAKKELPSGEFIGIVLKHKQRAVGYQSMVYVCIPLTNVEP--SLAGRVARRNE---VVKYEVPVDLMKELLKAFIIASETHKNDIVKFLRSII--
General information:
TITO was launched using:
RESULT:
Template:
2DVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130137 for 1503 contacts (-86.6/contact) +
2D Compatibility (PS) -22541 + (NN) -5090 + (LL) 2716
1D Compatibility (HY) -15600 + (ID) 3550
Total energy: -174202.0 ( -115.90 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_2DVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DVY-query.scw
PDB file :
Tito_Scwrl_2DVY.pdb
: