Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLEKQHIQYFKNLVGGEDFFTDLAHLNAYCYDATK-ERHLPSGVIFPKNEREISQILKYCNEHRLIVVPRGAGSGFTGGALSVSGGLVLSVEKHLDKILEIDTKNLIARVEPGVINKHFQNEVEKLDLFYPPDPASENQSTLGGNVAENAGGMRAAKYGITKDYVMALRVVLANGEIIRAGKKTIKDVAGFNIAGLMIASEGCLGVISEITLKLLAKPPLKQSAMGVFNHIEDAMNAVYKTMS-SGVTPVAMEFLDNLSIKAVEERFSKGLP--KDAGAILITQVDGVVKEQIAWQLNEIEKHFKANGC-V--GFKIAQNEQEEQDLWFSRRNASQSISVYGKKKLNEDVTVPRASLPSLLQEVAKISQK--YGFKIPCFGHTGDGNVHVNIMLED----PKRDLEKGHKAMEEIFQAAISLEGTLSGEHGIGLSKAKFMPLAFNHSEMELFRNIKKALDPNNILNPFKMGL |
| 3PM9 Chain:A ((13-476)) | -LSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVIS-LKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRD-DARAALESILERGFEDGIVVDAAIA--NSVQQQQAFWKLREEISPAQKP-EGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWH-DVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PM9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168667 for 3957 contacts (-42.6/contact) +
2D Compatibility (PS) -49035 + (NN) -18159 + (LL) 1164
1D Compatibility (HY) -17600 + (ID) 6400
Total energy: -258697.0 ( -65.38 by residue)
QMean score : 0.409
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