Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFEKWIGLTLLLSSLGYPCQKVSISFKQYENLIHIHQKGCNNEVVCRTLISIALLESSLGLNNKREKSLKDTSYSMFHITLNTAKKFYPTYSKTLLKTKLLNDVGFAIQLAKQILKENFDYYHQKHP-----NKSVYQLVEMAIGAYNGGMKHN----------PNGAYMKKFRCIYSQVRYNE
1GBS Chain:A ((52-181))
----------------------------------IKKVGEKLCVEPAVIAGIISRESHAGKVLKNGWGDRGNGFGLMQVDKRSHKP----Q--G------TWNGEVHITQGTTILTDFIKRIQKKFPSWTKDQQ----L-KGGISAYNAGAGNVRSYARMDIGTTHDDYANDVVARAQYYKQHG
General information:
TITO was launched using:
RESULT:
Template:
1GBS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34319 for 849 contacts (-40.4/contact) +
2D Compatibility (PS) -12152 + (NN) -3841 + (LL) 4236
1D Compatibility (HY) 400 + (ID) 1050
Total energy: -46726.0 ( -55.04 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1GBS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GBS-query.scw
PDB file :
Tito_Scwrl_1GBS.pdb
: