Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTMNAIRWPKKWIPGETDNFVSNEVIVKGLDFNKVVQHLRDASHWEKYYKNSGNIHMYHQDNTILKDKTRFCFETFGFLVEAEVEEFELKDAILRLAWRGWNEAKGDEYLEVYHAWLVEKLDNDRVRILTQESQSGVPAKALAKSVPNAMLNGHQAWLDGLVAYSR
4R7K Chain:A ((26-191))
-TTMNAIRWPKKWIPGETDNFVSNEVIVKGLDFNKVVQHLRDASHWEKYYKNSGNIHMYHQDNTILKDKTRFCFETFGFLVEAEVEEFELKDAILRLAWRGWNEAKGDEYLEVYHAWLVEKLDNDRVRILTQESQSGVPAKALAKSVPNAMLNGHQAWLDGLVAYSR
General information:
TITO was launched using:
RESULT:
Template:
4R7K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68293 for 1236 contacts (-55.3/contact) +
2D Compatibility (PS) -17993 + (NN) -3973 + (LL) 208
1D Compatibility (HY) -23600 + (ID) 8300
Total energy: -121951.0 ( -98.67 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_4R7K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R7K-query.scw
PDB file :
Tito_Scwrl_4R7K.pdb
: