Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKLAVFDFDSTLVNAETIESLARAWGVFDEVREITLKAMNGETDFHKSLILRVSKLKNMPLKLAKEVCESLPLFEGAFELISALKEKNYKVVCFSGGFDLATNHYRDLLNLDAAFSNTLIVENNALNGLVTGHMMFSYSKGEMLLALQRLLNISKDRTLVVGDGANDLSMFKHAHIKIAFNAKEILKQHATHCIDKPNLALIKPLI
3M1Y Chain:A ((3-208))
LQKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLK----ETDFHKSLILRVSKLKNMPLKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAFNAKEVLKQHATHCINEPDLALIKPL-
General information:
TITO was launched using:
RESULT:
Template:
3M1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140381 for 1724 contacts (-81.4/contact) +
2D Compatibility (PS) -21748 + (NN) -10845 + (LL) 304
1D Compatibility (HY) -30800 + (ID) 9350
Total energy: -212820.0 ( -123.45 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3M1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M1Y-query.scw
PDB file :
Tito_Scwrl_3M1Y.pdb
: