Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVITDLDKALSGLKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYVGENKIFESQMLNGEIEVVLTPQGTLAENLRAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKTTTRSAK
3RRL Chain:A ((5-233))
-NKVITDLDKALSALKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYVGENKIFESQMLNGEIEVVLTPQGTLAENLHAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKITTRS--
General information:
TITO was launched using:
RESULT:
Template:
3RRL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135405 for 1893 contacts (-71.5/contact) +
2D Compatibility (PS) -24980 + (NN) -10080 + (LL) 416
1D Compatibility (HY) -33200 + (ID) 11300
Total energy: -214549.0 ( -113.34 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3RRL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RRL-query.scw
PDB file :
Tito_Scwrl_3RRL.pdb
: