Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVDAFFQIIVLLFSLFLGARLGGLGVGYAGGLGVLILCLFLGLNPGKIPFDVILIIMAVISAISAMQKAGGLDYLVQIAEKILRKHPKQINYLAPSV--AYFLTILAGTGHTVFSLIPVIVEVSQSQNIKPKAPLSLAVVSSQVAITASPVSAAVVFMSGILEPLGADYLTLLMVWIPTTFLACMLTAFVMGFTDLKLDSDPNYLERLKAGKISPPMMKK----EKETSKSAKLSLWIFIGGVVAIVFYASAISKNIAL-ISPVILGR----DYAIVSFMLSVATLIAIFCKINANEIAHSSVFKSGMQACVCVLGVAWLGDTFVSNHIDEI-KRYASFLIADYPFLL--------AVALFLASMLLYSQAATSKALIPSVITALGISANHTEHLYIIVASFASVSALFVLPTYPTLLGAIAMDHTGTTKMGRYVFDHAFLIPGVLVVFLSVALGFVVAPLVL |
| 4MND Chain:A ((40-457)) | ----LMKAVILAAGLGGGVPKPLVRVG-----GCEIILRTMKLLSPHVS-EFIIVASRYADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVEDRFILTM----GDHVYS----------QQFIEKAVRGEGVIADREPRFVDIGEATKIRVEDGRVAKIGKDLRE--FDCVDTGFFVLD-DSIFEHAEKLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRALVSAAVGDGFISRKINRKISTRISAAIVNKVNPNQMTLISFLVGAFSALASF--FSIPLAGLLYQFSSILDGCDGEIARASLKMSKKGGYVDSILDRFVDFLFLAIIALLYPKTATVAMFAIFGSVMVSYTSEKYKAEFGESIRVLNYIPGKRDERIFLIMIFCLLSAISL-----------------------QWIFWMFLFVAAISLTRVVVTLLAVLVS--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -368241 for 3121 contacts (-118.0/contact) +
2D Compatibility (PS) -40501 + (NN) -9034 + (LL) 4492
1D Compatibility (HY) -21200 + (ID) 3300
Total energy: -437784.0 ( -140.27 by residue)
QMean score : 0.170
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