Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPLEDHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVEILKVIRENTNKKITSVKVRLGFEKKIPKEIAHALNDAPVDYVVVHGRTRSDRYQKDKIDYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQI----RNNTTELPAVVKKDLVLEHFDKMVEFY----GDR-GVIMFRKNLHAYAKGEMQASAFRNCVNTLTEIKSMRESIEEFFNQEMLQSEVPLWVELNQKSV |
| 1VHN Chain:A ((9-307)) | ----------LAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQ-PHERNVAVQIFGSEPNELSEAARILS--EKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKF-SVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFT-GRAEWKALSVLEKRI--PTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPS---REEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQILKEMFYNFIKEVE---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151830 for 2418 contacts (-62.8/contact) +
2D Compatibility (PS) -30659 + (NN) -10215 + (LL) 3468
1D Compatibility (HY) -19200 + (ID) 5000
Total energy: -213436.0 ( -88.27 by residue)
QMean score : 0.489
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