Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRSIAYLDSVFDISYTFIDHHSPLNALFLHGWGSSKEIMQQAFQGCF-LNYNHLYVDLPGFNQSPNDEKVLETKDYANIINLFLKSVGKKAHVVFGHSFGGKVAILCE---NERM---VLLSSAGILEPK-PLKVRCKILL-AKIFKKL--GLNLGFLRS-------KDAMGLNQ--------VMYETFKKVISEDFSDHFKRCEKEVLLFWGKDDKATPLSSAQTMRTLLKKSELFVLEGDHFFFLNQAKEIEKLVENYHHAKS
3OM8 Chain:A ((12-266))
---------SDGASLAYRLDGAAEKPLLALSNSIGTTLHMWD-AQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLPAVHLSNVEFPQAFEGAVLSFLGA--
General information:
TITO was launched using:
RESULT:
Template:
3OM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149265 for 1922 contacts (-77.7/contact) +
2D Compatibility (PS) -24398 + (NN) -14474 + (LL) 1260
1D Compatibility (HY) -8400 + (ID) 1900
Total energy: -197177.0 ( -102.59 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_3OM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OM8-query.scw
PDB file :
Tito_Scwrl_3OM8.pdb
: