Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEGLFVAPVLAILGAISADEMEKKRDDAKAYYSQVEVAVKKADVVIDNLQ-AVKKMADLFTRQITKFDALFFLLSQDAIATMKKHHYDTSRYN-QKEKDQLCVTVSTLFSLSAFLKAPIMDKHQKLNKKAQKALNLMRDQMDSLENGNYSLDGIRFRQAQLKDLRDDKTS
4F4O Chain:A ((47-137))
-------------------NLSHGSDQVKAHGQKVADALTKAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHHPDDFNPSVHASLDKFLANVSTVLTSKYR--------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4F4O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25433 for 502 contacts (-50.7/contact) +
2D Compatibility (PS) -9248 + (NN) -3711 + (LL) 5696
1D Compatibility (HY) -2800 + (ID) 1200
Total energy: -36696.0 ( -73.10 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_4F4O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F4O-query.scw
PDB file :
Tito_Scwrl_4F4O.pdb
: