Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKR-------------HKLVDIAIREIAEGKIDIDRIDERN----------------
1HQM Chain:E ((1-98))
MAEPGIDKLFGMV-----DSKYRLTVVVAKRAQQLLRHRFKNTVLEPEERPKMRTLEGLYDDPNAVTWAMKELLTGRLFFGENLVPEDRLQKEMERLYPTEEE
General information:
TITO was launched using:
RESULT:
Template:
1HQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21657 for 410 contacts (-52.8/contact) +
2D Compatibility (PS) -7253 + (NN) -3561 + (LL) 192
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -36129.0 ( -88.12 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_1HQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HQM-query.scw
PDB file :
Tito_Scwrl_1HQM.pdb
: