Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFTVIFVAVLQAALGMLSVRQEICRNPSQPHDFKSLVIVTNFY
1DOK Chain:A ((47-60))
-----------------IVAKEICADPKQKWVQDSMDHLDKQT
General information:
TITO was launched using:
RESULT:
Template:
1DOK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 252 for 29 contacts (8.7/contact) +
2D Compatibility (PS) -1490 + (NN) -2027 + (LL) 2420
1D Compatibility (HY) -1200 + (ID) 300
Total energy: -2345.0 ( -80.86 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1DOK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DOK-query.scw
PDB file :
Tito_Scwrl_1DOK.pdb
: