Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEHRVFTIANFFSSNHDFITGFFVVLTAVLMFFISLGASRKMQMVPMGLQNVYESIISAILSVAKDIIGEELARKYFPLAGTIALYVFFSNMIGIIP------------GFES----PTASWSFTLVLALIVFFYYHFEGIRVQGFFKYFAHFAGPVKWLAPFMFPIEIISHFSRIVSLSFRLFGNIKGDDMFLLIMLLLVPW------AVPVAPFMVLFFMGILQAFVFMILTYVYLAGAVLTDEGH
1C17 Chain:M ((103-265))
-----------------------------------------------------------------------------PLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMK--------------------------SLLSKPVSLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVPWAIFHILIIT--LQAFIFMVLTIVYLS---------
General information:
TITO was launched using:
RESULT:
Template:
1C17.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95445 for 663 contacts (-144.0/contact) +
2D Compatibility (PS) -11355 + (NN) -4772 + (LL) 9780
1D Compatibility (HY) -20800 + (ID) 2450
Total energy: -125042.0 ( -188.60 by residue)
QMean score : 0.017
(partial model without unconserved sides chains):
PDB file :
Tito_1C17.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C17-query.scw
PDB file :
Tito_Scwrl_1C17.pdb
: