Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILKNAIALTGGIGTGKSTTLKILESQGYKILDADKIAHQLLQE---HRLEIAQRFGSDILE-KDILNRKKLGAIVFQNANELKWLEDFLHPLIRECMLKKACELEKNHQAYFLDIPLFFEVGGKKRYP-VSRVVLIYAPRALQIERLLERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSSLKDLNKQVERFLKTLL
1VHT Chain:A ((2-195))
-SLRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENSLY---KKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHYL
General information:
TITO was launched using:
RESULT:
Template:
1VHT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101250 for 1369 contacts (-74.0/contact) +
2D Compatibility (PS) -21067 + (NN) -14807 + (LL) 632
1D Compatibility (HY) -9600 + (ID) 2850
Total energy: -148942.0 ( -108.80 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_1VHT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHT-query.scw
PDB file :
Tito_Scwrl_1VHT.pdb
: