Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVYPQVLSIAGSDSGGGAGIQADLKAFQTFGVFGTSVITCITAQNTQGVHGVYPLSVESVKAQILAIRDDFSIKAFKMGALCNAQIIECVANALETCDFGLCVLDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYALTGVQARDDKSASKAMGVLRDLGVKNAVIKGGHTEHFQGEFSNDWVFLEDAEFILSAKRFNTKNTHGTGCTLSSLIVGLLAQGLDLKNAITKAKELLTIIIQNPLNIGHGHGPLNLWSIKKHV
1UB0 Chain:A ((1-256))
---MRVALTIAGSDSGGGAGVQADLKVFFRFGVYGTSALTLVTAQNTLGVQRVHLLPPEVVYAQIESVAQDFPLHAAKTGALGDAAIVEAVAEAVRRFGVRPLVVDPVM---------AKEAAAALKERLFPLADLVTPNRLEAEALLGRPIRTLKEAEEAAKALLALGPKAVLLKGGHL-----EA-VDLLATRGGVLRFSAPRVHTRNTHGTGCTLSAAIAALLAKGRPLAEAVAEAKAYLTRALKTAPSLGHGHGPLDHWA-----
General information:
TITO was launched using:
RESULT:
Template:
1UB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178577 for 2229 contacts (-80.1/contact) +
2D Compatibility (PS) -26490 + (NN) -10268 + (LL) 1944
1D Compatibility (HY) -11600 + (ID) 5900
Total energy: -230891.0 ( -103.59 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1UB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UB0-query.scw
PDB file :
Tito_Scwrl_1UB0.pdb
: