Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQRKESLQNNPNLSKKDIKIVEKILSKNDIKAAEMKERYLKEGLYVLNFMSSPGSGKTTMLENLADFKDFKFCVVEGDLQTNRDADRLRKKGVSAHQITTGEACHLEASMIEGAFDLLKDEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDKVLKYPTMFMCADAVIISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTHSF
4LPS Chain:B ((28-242))
---------------------------SKNDIKAAEMKERYLKEGLYVLNFMSSPGSGKTTMLENLADFKDFKFCVVEGDLQTNRDADRLRKKGVSAHQITTGEACHLEASMIEGAFDLLKDEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDKVLKYPTMFMCADAVIISKADMVEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTHSF
General information:
TITO was launched using:
RESULT:
Template:
4LPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139046 for 1813 contacts (-76.7/contact) +
2D Compatibility (PS) -23557 + (NN) -11801 + (LL) 1972
1D Compatibility (HY) -30800 + (ID) 10700
Total energy: -213932.0 ( -118.00 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_4LPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LPS-query.scw
PDB file :
Tito_Scwrl_4LPS.pdb
: