Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIFINGFGRIGRCVLRAILERNDTNP--QLEVIGINDPANWEILAYLLEHDSTHGLLNKEVRYS-NGKLIIGSLEIPVFNS--IKD----LKGVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQ-NQAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTLE-NMVKIMGWYDNEWGYSNRLVDMAQFMYHY |
| 1RM4 Chain:O ((2-334)) | LKVAINGFGRIGRNFLRCWHG----RKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKG-----DIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -242587 for 2815 contacts (-86.2/contact) +
2D Compatibility (PS) -34082 + (NN) -3760 + (LL) 144
1D Compatibility (HY) -22800 + (ID) 6700
Total energy: -309785.0 ( -110.05 by residue)
QMean score : 0.533
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