Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKISCLLLVISLFGGFLNASSLYEKLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKELGVKIKFHETSWDIMLTGLKSGRFDMVANQVSLTTKKRQAAFDKSLPYSYSGTIMLVRKDENRIKDIRDIKGLKAANTLSSTYGEIAFKYDAQIVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKNSPFKIAWESKEKDG-GASFVINKHQEKALELINQAMRRLINKGVLKRLGEQFFGKDVSQP
2YLN Chain:A ((46-281))
-------------------SGSLIERINNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSN-IKSIADIKGVKTAQSLTSNYGEKAKAAGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ
General information:
TITO was launched using:
RESULT:
Template:
2YLN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120901 for 1997 contacts (-60.5/contact) +
2D Compatibility (PS) -25562 + (NN) -14321 + (LL) 1756
1D Compatibility (HY) -21200 + (ID) 6450
Total energy: -186678.0 ( -93.48 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_2YLN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YLN-query.scw
PDB file :
Tito_Scwrl_2YLN.pdb
: