Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKSDGTNGTSFGNAGLISAFKKAPLSCPGVVLDTLKLMLKNQAPLKFHFGLNLKLYQWILKFMTSANAKSTHRTIALFERYGWLSIDMYHQMLK-----DGMDFWYKEDGLLMIYTLEESFEKKLKTCDNSGAYKILNVKETKEYMPIANDNICGSVLLTENAHVDPGEVVRSLQQYLQNAGVEFLYNEEVIDFEFKNNLIEGVITHKEKIQAETIILATGANP-TLIKKTKNDFLMMGAKGYSITFKMPEELKPKTSSLFADIFMAMTPRRD-TVRITSKLELNTNNALIDKEQIANMKKNLAAFTQPF-EMKDAIEWCGFRPLTPNDIPYLGYDKRYKNLIHATGLGWLGITFGPAIGKIIANLSQDGANE-KNADIMLFSAFFRD |
| 1RYI Chain:A ((16-377)) | RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECE---ER----------------------------------------------DAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQ-LRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGE-ALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDD--IPLTKTLY-HDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1RYI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -194413 for 3118 contacts (-62.4/contact) +
2D Compatibility (PS) -37982 + (NN) -12488 + (LL) 5228
1D Compatibility (HY) -11200 + (ID) 3700
Total energy: -254555.0 ( -81.64 by residue)
QMean score : 0.487
|
|
|