Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVHQSEMENYNIGQASIEEVSDPAY---KGAKIVVVGVGGGGSNMIKHLVEYGVHQDVTPIATNTDGQHLKNNPAPVKILLGKESTGGLGAGGVPDIGKKAAEESADEIREAIKDAKLVIVSTGLGGGTGTGATPTIVKIAKEVGALTIAIVTKPFKYEGNQKRKRAEEGLKELEQSSDSILVIPNDKILLTMKKNASTTECYREVDDVLVRAVSGISTIITKPGNINVDFADLKSALGFKGFALMGIGEATGEDSAKLAVQNAIQSPLLDDASIEGAKSIIVFFEHHPDYPMMAYSQACDFIQDQAHQDVDVKFGQHTSENIPIDHVRVTIIATGSERNSNGAGLESIATPSQPVVKPTRKVGNGEYLRIPTEEELSIPTTIRIQQD
2VAP Chain:A ((20-341))------------LELSPEDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKT-VAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEK-LFEIVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLD-VDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLE-NTVRVLLVITGVQSRIEFTDTGLKRK-------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2VAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189057 for 2918 contacts (-64.8/contact) +
2D Compatibility (PS) -35704 + (NN) -19518 + (LL) 2544
1D Compatibility (HY) -22400 + (ID) 6750
Total energy: -270885.0 ( -92.83 by residue)
QMean score : 0.642

(partial model without unconserved sides chains):
PDB file : Tito_2VAP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2VAP-query.scw
PDB file : Tito_Scwrl_2VAP.pdb: