Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEIKTLLVDFFPQAKHFGIILIKAIVVFCIGFYFSFFLRNKTMKLLSKKDEILANFVAQVTFILILIITTIIALSTLGVQTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALNFFNTSLRLHDGRLAVLPNRSVANSNIINSNNTACRRIEWVCGVGYGSDIELVHKTIKDVIDGMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVRSELIERIKNALDANRIEIPFNKLDISINKQDSSK
4HW9 Chain:A ((18-270))
-----------------FGIILIKAVIVFCIGFYFSFFLRNKTMKLLSKKDEILANFVAQVTFILILIITTIIALSTLGVQTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALNFFNTSLRLHDGRLAVLPNRSVANSNIINSNNTACRRIEWVCGVGYGSDIELVHKTIKDVIDTMEKIDKNMPTFIGITDFGSSSLNFTIRVWAKIEDGIFNVRSELIERIKNALDANHIEIPFNKLDIAIKNQ----
General information:
TITO was launched using:
RESULT:
Template:
4HW9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134005 for 1600 contacts (-83.8/contact) +
2D Compatibility (PS) -26400 + (NN) -4428 + (LL) 1452
1D Compatibility (HY) -44400 + (ID) 12250
Total energy: -220031.0 ( -137.52 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_4HW9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HW9-query.scw
PDB file :
Tito_Scwrl_4HW9.pdb
: