Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLN----LGAYFIAQNLKENVYHKSLPKPLIYDLGCSTGNFFIALNQQIQQ-DIELVGIDNSMPMLKKAQEKLKDFNN---VRFECMDFLEVKFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT
1IM8 Chain:A ((20-244))
-------------FIFDENVAEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSN------------VYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK-
General information:
TITO was launched using:
RESULT:
Template:
1IM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156864 for 1756 contacts (-89.3/contact) +
2D Compatibility (PS) -23248 + (NN) -6485 + (LL) 1388
1D Compatibility (HY) -19200 + (ID) 4300
Total energy: -208709.0 ( -118.85 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1IM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM8-query.scw
PDB file :
Tito_Scwrl_1IM8.pdb
: