Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFSLSYVSKKFLSVLLLISLFLSACKSNNKDKLDENLLSSGTQSSKELNDKRDNIDKKSYAGLEDVFLDNKSISPNDKYMLLVFGRNGCSYCERLKKDLKNVKELRNYIKEHFSAYYVNISYSKEHNFKVGDKDKNDEKEIKMSTEELAQIYAVQSTPTIVLSDKTGKTIYELPGYMPSVQFLAVLEFIGDGKYQDTKNDEDLTKKLKAYIKYKTNLSKSKSS
4FYB Chain:B ((76-237))
-------------------------------------------------------DKKSYAGLEDVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSKEHDFKVG--DKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGKTIYELPGYMPSTQFLAVLEFIGDGKYQDTKDDEDLTKKLKAYIKYKTNLSK----
General information:
TITO was launched using:
RESULT:
Template:
4FYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89354 for 1210 contacts (-73.8/contact) +
2D Compatibility (PS) -17430 + (NN) -10101 + (LL) 3336
1D Compatibility (HY) -21200 + (ID) 7750
Total energy: -142499.0 ( -117.77 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_4FYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FYB-query.scw
PDB file :
Tito_Scwrl_4FYB.pdb
: