Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKRIKTLLLFFGLNMVCLSVSFTNKPHLC-----FWFLVLGCYLVYEWQKKQKKDFQSAKSLKFDSVSELEKDLNMEVTNDEWDTIKKLNEKLKMFFNVE-------NAIYVFLLVSYLIVGMRVTLSLIDNHGVLK--
1VSR Chain:A ((3-136))
AIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCF----WHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS--RLQELGWRVLIVWECALRGREKLTDEALTERLEEWICG-EGASAQIDTQGIHLLA
General information:
TITO was launched using:
RESULT:
Template:
1VSR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54636 for 780 contacts (-70.0/contact) +
2D Compatibility (PS) -12587 + (NN) -1729 + (LL) 852
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -73850.0 ( -94.68 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_1VSR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VSR-query.scw
PDB file :
Tito_Scwrl_1VSR.pdb
: