Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGYASKLALKICLVGLCLFSTLGAEHLEQKGNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKKKAEEYMQKACDFDIDKNCKKKNTSSR
1OUV Chain:A ((36-244))
------------------------------------GAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR---GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY
General information:
TITO was launched using:
RESULT:
Template:
1OUV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68668 for 1824 contacts (-37.6/contact) +
2D Compatibility (PS) -23415 + (NN) -15875 + (LL) 3068
1D Compatibility (HY) -11200 + (ID) 3200
Total energy: -119290.0 ( -65.40 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_1OUV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OUV-query.scw
PDB file :
Tito_Scwrl_1OUV.pdb
: