Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRSSVFSFLVAFLLVVGCSHKMDNKTVAGDVSTKAVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKENHMQ-VLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGESKPKCVQKTR--------------------ECYRENRRVDVKLVK
1R1M Chain:A ((13-140))
-----------------------------------------------------------------------LSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRS
General information:
TITO was launched using:
RESULT:
Template:
1R1M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16582 for 783 contacts (-21.2/contact) +
2D Compatibility (PS) -11131 + (NN) -1792 + (LL) 4608
1D Compatibility (HY) -6800 + (ID) 2000
Total energy: -33697.0 ( -43.04 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_1R1M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R1M-query.scw
PDB file :
Tito_Scwrl_1R1M.pdb
: