Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKCEKRVFDSLPSTQTYLLEKLKSNKLKAPVLVLAKNQSAGIGSRGNIWEIVES-ALTFSLALNASDLPKDLPMQASALYLGFLFKEVLKELG-SQTWLKWPNDLYLGDQKIGGVMVNVYK-GMRVCGIGVNRVSTKWACLDI---GASDDWIIESFLKKIEENL-FWG-----EVLSKYAL-EFHRSNSFNFHNDWGEAVSLKDAELLEDGRICIKGKIYDRM
1BIA Chain:A ((78-304))
--GGSVAVLPVIDSTNQYLLDRIG--ELKSGDACIAEYQQAG---------SPFGANLYLSMFWRLEQ-P-A-AAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGAAQIVIGAGINMAM--WITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIG-DKEIFGISRGIDKQGALLLEQDGIIKP
General information:
TITO was launched using:
RESULT:
Template:
1BIA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120604 for 1426 contacts (-84.6/contact) +
2D Compatibility (PS) -20260 + (NN) -7713 + (LL) 1168
1D Compatibility (HY) -14000 + (ID) 2200
Total energy: -163609.0 ( -114.73 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_1BIA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BIA-query.scw
PDB file :
Tito_Scwrl_1BIA.pdb
: