Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MIDQLQ--IVPKAQVLKNNTMERSLALALQKVSIPRSTSAHRTL-LINHFLEQVILQNIKTIAFRGIIKLTPHNENPLLKPYSAFITLNSIIRACAYCPL
4JM1 Chain:A ((1-84))
GADKYIDTITGFSCEKAAVTDNG----FLVIAID------ADSDSGYDMLASQFLEEAKKEGVSGL--KGVLIVDIKN----AKFEQGAVVGKRIGKAYK----
General information:
TITO was launched using:
RESULT:
Template:
4JM1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72000 for 546 contacts (-131.9/contact) +
2D Compatibility (PS) -8064 + (NN) -2167 + (LL) 1376
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -84555.0 ( -154.86 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_4JM1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JM1-query.scw
PDB file :
Tito_Scwrl_4JM1.pdb
: