Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKIGIFFGTDSGNAEAIAEKISKAIGNAEVIDVAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVKGSFA
2BMV Chain:A ((2-164))
-GKIGIFFGTDSGNAEAIAEKISKAIGNAEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSFA
General information:
TITO was launched using:
RESULT:
Template:
2BMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104590 for 1421 contacts (-73.6/contact) +
2D Compatibility (PS) -17556 + (NN) -7947 + (LL) 208
1D Compatibility (HY) -19200 + (ID) 7950
Total energy: -157035.0 ( -110.51 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_2BMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BMV-query.scw
PDB file :
Tito_Scwrl_2BMV.pdb
: