Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTNGLFKMWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDSKGNYQGYDVVIAKRMALDLLGDENKIEFIPVEASARVEFLKANKVDIIMANFTRTKEREKVVDFANPYMKVALGV-ISKDGVIKNIEELKDKELIVNKGTTADFYFTKNYPNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWVKQHPEFKLGITSLGDKDVIAPAIKKGNPKLLEWLNNEIDSLISSDFLKEAYQETLEPIYGDGIKPEEIIFE
1XT8 Chain:B ((31-280))
----------------------------SKTLNSLDKIKQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIE
General information:
TITO was launched using:
RESULT:
Template:
1XT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138594 for 2110 contacts (-65.7/contact) +
2D Compatibility (PS) -27293 + (NN) -15856 + (LL) 2368
1D Compatibility (HY) -25600 + (ID) 7400
Total energy: -212375.0 ( -100.65 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_1XT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XT8-query.scw
PDB file :
Tito_Scwrl_1XT8.pdb
: