Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSL---ASAKFDETVEVALRLGVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKN-GRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK
3QOY Chain:A ((2-235))
--ARRGKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEVLKKL
General information:
TITO was launched using:
RESULT:
Template:
3QOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117255 for 1844 contacts (-63.6/contact) +
2D Compatibility (PS) -24934 + (NN) -11031 + (LL) 352
1D Compatibility (HY) -19200 + (ID) 5900
Total energy: -177968.0 ( -96.51 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3QOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QOY-query.scw
PDB file :
Tito_Scwrl_3QOY.pdb
: