Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILRLENDTRYFKDFTQVLALNYGSKNELSRAFKSLLENPPNHINNIESLENEISHRLDTHDLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKC
2DTN Chain:A ((14-237))
--STLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAF----------EVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPSNISLLESLENEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRV--------
General information:
TITO was launched using:
RESULT:
Template:
2DTN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105083 for 1624 contacts (-64.7/contact) +
2D Compatibility (PS) -22667 + (NN) -9550 + (LL) 920
1D Compatibility (HY) -31200 + (ID) 10150
Total energy: -177730.0 ( -109.44 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_2DTN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DTN-query.scw
PDB file :
Tito_Scwrl_2DTN.pdb
: