Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRRWFLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIELTYQNPMFWHVGRVENEGLKTLLLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSALYNKVAL
2UVP Chain:D ((8-186))
-KNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHWFLNYILSNLNPKDLKERPLLSVIDFNASSFYPKN---LSLATIEMTYQNPMFWHVGKIENEGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYNKVTL
General information:
TITO was launched using:
RESULT:
Template:
2UVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116287 for 1190 contacts (-97.7/contact) +
2D Compatibility (PS) -18399 + (NN) -7434 + (LL) 196
1D Compatibility (HY) -30000 + (ID) 8450
Total energy: -180374.0 ( -151.57 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2UVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UVP-query.scw
PDB file :
Tito_Scwrl_2UVP.pdb
: