Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTEMKSFLKLFAQPLLVVLAFMLLYALAHAVLGFYVKKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKIIGSLIKNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE |
2KT8 Chain:A ((10-63)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------SSSLNVREGASTSSKVIGSLSGNTKVTIVGEEGAFYKIEY-KGSHGYVAKEYIKDIK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KT8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23718 for 305 contacts (-77.8/contact) +
2D Compatibility (PS) -5595 + (NN) 2984 + (LL) 12164
1D Compatibility (HY) -3600 + (ID) 950
Total energy: -18715.0 ( -61.36 by residue)
QMean score : 0.465
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